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===== Publications in the Neurolog project =====



===== 2011 =====


    * Michel Dojat, Mélanie Pélégrini-Issac, Farooq Ahmad, Christian Barillot, Bénédicte Batrancourt, Alban Gaignard, Bernard Gibaud, Pascal Girard, David Godard, Gilles Kassel, Diane Lingrand, Grégoire Malandain, Franck Michel, Johan Montagnat, Xavier Pennec, Javier Rojas Balderrama, Bacem Wali. {{:public_namespace:hbm11-def.pdf|NeuroLOG: A framework for the sharing and reuse of distributed tools and data in neuroimaging}}. In Proceedings of the 17th Annual Meeting of the Organization for Human Brain Mapping, June 26-30, 2011, Québec City, Canada.


    * Michel Dojat, Mélanie Pélégrini-Issac, Bénédicte Batrancourt, Alban Gaignard, Bernard Gibaud, David Godard, Gilles Kassel, Franck Michel, Johan Montagnat, Xavier Pennec. {{:public_namespace:rits2011_final.pdf|NeuroLOG: A federated software architecture for the sharing and reuse of distributed data and processing tools in neuroimaging}}. Accepté en communication orale au congrès du RITS 2011, Rennes 6-8 avril 2011.


    * B. Gibaud, F. Ahmad, C. Barillot, F. Michel, B. Wali, B. Batrancourt, M. Dojat, P. Girard, A. Gaignard, D. Lingrand, J. Montagnat, J. Rojas Balderrama, G. Malandain, X. Pennec, D. Godard, G. Kassel, M. Pélégrini-Issac. A federated system for sharing and reuse of images and image processing tools in neuroimaging. Accepted for oral communication in CARS 2011, Berlin 22-25 juin 2011.
    * Gibaud B., Kassel G., Dojat M., Batrancourt B., Michel F., Gaignard A.,  Montagnat J. [[http://hal.archives-ouvertes.fr/docs/00/68/30/87/PDF/amia-2011-revised.pdf|NeuroLOG: sharing neuroimaging data using an ontology-based  federated approach]]. AMIA 2011.

===== 2010 =====


    * Diane Lingrand, Johan Montagnat. {{:public_namespace:escience.pdf|Efficient resubmission strategies to design robust grid production environments}} in Proceedings of the IEEE e-Science, Brisbane, Australia, December 2010.
    * J. Rojas Balderrama, J. Montagnat, and D. Lingrand. [[http://nyx.unice.fr/publis/rojasbalderrama-montagnat-etal:2010.pdf|jGASW: A Service-Oriented Framework Supporting High Throughput Computing and non-functional Concerns]]. The IEEE 8th International Conference on Web Services (ICWS’10), Miami FL, USA. July, 5-10, 2010.
    * Franck Michel, Alban Gaignard, Farooq Ahmad, Christian Barillot, Bénédicte Batrancourt, Michel Dojat, Bernard Gibaud, Pascal Girard, David Godard, Gilles Kassel, Diane Lingrand, Grégoire Malandain, Johan Montagnat, M. Pélégrini-Issac, Xavier Pennec, Javier Rojas Balderrama, Bacem Wali. [[http://hal.archives-ouvertes.fr/docs/00/67/78/15/PDF/healthgrid10.pdf|Grid-wide neuroimaging data federation in the context of the NeuroLOG project]], HealthGrid'10 (HG'10), IOS Press, Paris, France, June 2010.
    * Kassel, G. A Formal Ontology of Artefacts. Applied Ontology, 5(3-4):223-246. 2010.
    * Batrancourt B., Dojat M., Gibaud B., and Kassel G. {{:public_namespace:fois2010.pdf|A core ontology of instruments used for neurological, behavioral and cognitive assessments}}. In: A. Galton and R. Mizoguchi, eds., Proceedings of the Sixth International Conference on formal Ontology in Information Systems (FOIS 2010), IOS Press, Toronton (Ca), May 2010. ({{:public_namespace:instruments_fois2010.pdf|slides}} ).

===== 2009 =====


    * Batrancourt B., Dojat M., Gibaud B., and Kassel G. {{:public_namespace:bb121311v2.pdf|Ontologie des instruments pour le partage du résultat d’explorations cognitives et comportementales en neuroimagerie}}. Assemblée Générale du GdR STIC-Santé, 12-13 Novembre 2009, Paris.
    * Diane Lingrand, Tristan Glatard, Johan Montagnat. "[[http://dx.doi.org/10.1016/j.parco.2009.07.003|Modeling the latency on production grids with respect to the execution context]] " in Parallel Computing (PARCO), vol 35(10-11), pages 493-511, Elsevier, October-November 2009.
    * Julien Perez, Cecile Germain-Renaud, Balazs Kegl, C. Loomis. [[http://hal.inria.fr/docs/00/38/49/70/PDF/rlsched-perez02.pdf|Responsive Elastic Computing]]. Grids Meet Autonomic Computing workshop, Barcelona, June 2009, ACM Press.
    * Alban Gaignard, Johan Montagnat. "[[http://hal.archives-ouvertes.fr/docs/00/67/77/95/PDF/healthgrid09-security-short.pdf|A distributed security policy for neuroradiological data sharing]] ", HealthGrid'09, pages 257-262, IOS Press, Berlin, Germany, June 2009.
    * Diane Lingrand, Johan Montagnat, Janusz Martyniak, David Colling. "[[http://rainbow.polytech.unice.fr/publis/lingrand-montagnat-etal:2009a.pdf|Analyzing the EGEE production grid workload: application to jobs submission optimization]] " in proceedings of the 14th Workshop on Job Scheduling Strategies for Parallel Processing (JSSPP'09), associated to IPDPS, vol. LNCS, Springer, Roma, Italy, 29 may 2009.
    * G. Kassel. {{:public_namespace:ic2009_kassel.pdf|Vers une ontologie formelle des artefacts}}. In Actes des 20èmes Journées Francophones d'Ingénierie des Connaissances (IC'2009), Hammamet (Tunisie), 25-29 mai 2009.
    * P. Lando, A. Lapujade, G. Kassel, F. Fürst. {{:public_namespace:lando_et_al-ccis.pdf|Towards a general ontology of computer programs}}. In Communications in Computer and Information Science, Springer Berlin Heidelberg, vol. 22, 2009, p. 371-383.

===== 2008 =====
  * Diane Lingrand, Johan Montagnat, Tristan Glatard. "{{public_namespace:pitj-2-08.pdf|Estimation of the latency of a production grid over several weeks}}" in Philippine Information Technology Journal (PITJ), vol. 2, December 2008.

  * Javier Rojas Balderrama, Diane Lingrand, Johan Montagnat, Erik Pernod, Jean-Christophe Souplet, Xavier Pennec. [[http://neurolog.polytech.unice.fr/lib/exe/fetch.php?id=public_namespace%3Anews&cache=cache&media=public_namespace:posteregee08.pdf|"NeuroLOG: Neuroscience Application Workflows Execution on the EGEE Grid"]] best poster award at the EGEE conference, Istanbul, Turkey, 22-26 sept. 2008

  * Erik Pernod, Jean-Christophe Souplet, Javier Rojas Balderrama, Diane Lingrand, Xavier Pennec. "{{public_namespace:pernodmiccaig08.pdf|Multiple Sclerosis Brain MRI Segmentation Workflow deployment on the EGEE Grid}}" in Proceedings of the MICCAI-Grid Workshop (MICCAI-Grid), New-York, USA, 6 sept. 2008

  * Temal L, Dojat M, Kassel G and Gibaud B. [[http://dx.doi.org/10.1016/j.jbi.2008.03.002|Towards an Ontology for Sharing Medical Images and Regions of Interest in Neuroimaging]], Journal of Biomedical Informatics, 41(5),766-778, 2008.

  * Montagnat J, Gaignard A, Lingrand D, Rojas Balderrama J, Collet P, Lahire P. [[http://www.i3s.unice.fr/~johan/publis/HealthGrid08.pdf|NeuroLOG: a community-driven middleware design]]. HealthGrid'08, IOS Press, Chicago, 2-4 jun 2008. 

  * Lingrand D, Montagnat J, Glatard T. "Estimating the execution context for refining submission strategies on production grids", workshop on Assessing Models of Networks and Distributed Computing Platforms (ASSESS'08) held in conjunction with CCGrid'08, IEEE, Lyon, may 2008

===== 2007 =====

  * Johan Montagnat, Tristan Glatard, Diane Lingrand. [[http://www.i3s.unice.fr/~johan/publis/MIT07.pdf|Texture-based Medical Image Indexing and Retrieval on Grids]] in //Medical Imaging Technology// (**MIT**), 25 (5), nov 2007.
  * Gilles Kassel, Pascal Lando, Anne Lapujade, Frédéric Fürst. {{public_namespace:kassel-fjo2007.pdf|Des Artefacts aux Programmes}}. Proceedings of the //1ères Journées Francophones sur les Ontologies// (**JFO 2007**), 18-20 October 2007, Sousse (Tunisia), p. 281-300.
  * Tristan Glatard, Diane Lingrand, Johan Montagnat, Michel Riveill. "[[http://www.i3s.unice.fr/~johan/publis/WCAMG07.pdf|Impact of the execution context on Grid job performances]]" in Proceedings of the //International Workshop on Context-Awareness and Mobility in Grid Computing// (**WCAMG07**), IEEE, Rio de Janeiro, May 2007. ([[http://proton.polytech.unice.fr/biblio/displayReference.php?idPaper=868&&export=bibtex|BibTeX]])
  * Pascal Lando, Frédéric Fürst, Gilles Kassel, Anne Lapujade. "{{public_namespace:ic-2007.pdf|Premiers pas vers une ontologie des programmes informatiques}}. Proceedings of the 18th //Journées Francophones d'Ingénierie des Connaissances// (**IC 2007**), Grenoble, France, july 2007.
  * Lynda Temal, Pascal Lando, Michel Dojat, Frédéric Fürst, Bernard Gibaud, Gilles Kassel, Anne Lapujade. "{{public_namespace:gdri3-oghs-neurolog.pdf|OntoNeuroLOG : une ontologie modulaire et multi-niveaux pour gérer l'hétérogénéité sémantique des métadonnées}}. Actes de la journée thématique "//Ontologies et Gestion de l'Hétérogénéité Sémantique//" du GDR I3, Grenoble, 3 juillet.
  * Pascal Lando, Anne Lapujade, Gilles Kassel, Frédéric Fürst. "{{public_namespace:icsoft2007.pdf|Towards a
general ontology of computer programs}}". Proceedings of the 2nd //International Conference on Software and Data
Technologies// (**ICSOFT 2007**), area: Knowledge Engineering, 25-27 July 2007, Bacelonia (Spain).


===== Standard acknowledgement =====

Do not forget to acknowledge the funding agency in publications (NeuroLOG is a project funded by the French National Agency for Research under contract number **ANR-06-TLOG-024**).

This work is funded by the French national research agency (ANR), NeuroLog project\footnote{Neurolog: \texttt{http://neurolog.polytech.unice.fr}} under contract number ANR-06-TLOG-024.
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